G-quadruplexes are non-canonical nucleic acid structures that control transcription, replication and translation, regulated genome recombination and genetic and epigenetic instability. G-quadruplexes are present in eukaryotes, prokaryotes and viruses. On this platform the analyses performed on all human viruses can be easily examined and downloaded.
For each viral class of the Baltimore classification, a compressed tarball is available (here) and contains:
The list of all analyzed viruses in each class is provided. Viral names are links to dedicated pages containing visual information regarding G-quadruplexes found in each virus:
Supplementary files and scripts are available for download.
Lavezzo E, Berselli M, Frasson I, Perrone R, Palù G, Brazzale AR, Richter SN, Toppo S. (2018) G-quadruplex forming sequences in the genome of all known human viruses: A comprehensive guide. PLoS Comput Biol 14(12): e1006675. https://doi.org/10.1371/journal.pcbi.1006675.
Filename | Filesize | Last modified |
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Reference_sequences.tar.gz | 1.6 MiB | 2018/08/01 16:38 |
dsDNA.tar.gz | 37.7 MiB | 2018/08/01 18:40 |
dsDNA_RT.tar.gz | 2.7 MiB | 2018/08/01 18:40 |
dsRNA.tar.gz | 5.8 MiB | 2018/08/01 18:40 |
ssDNA.tar.gz | 125.6 KiB | 2018/08/01 18:40 |
ssRNA_RT.tar.gz | 32.6 MiB | 2018/08/01 18:40 |
ssRNA_negative_polarity.tar.gz | 12.8 MiB | 2018/08/01 18:40 |
ssRNA_positive_polarity.tar.gz | 14.5 MiB | 2018/08/01 18:40 |
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Supplementary_Material.pdf | 1019.6 KiB | 2018/08/01 15:55 |
Supplementary_table_S3.xlsx | 48.7 KiB | 2018/08/01 15:55 |
scripts.tar.gz | 204.2 KiB | 2018/10/09 12:22 |