(This is a lighter version of the tool for simple online analyses, for more complex analyses the complete tool is available from the download page)
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Query in FASTA / multi-FASTA format (maximum 10000 bp):
or select a file to upload (maximum 15 Kb). (uploaded file MUST BE in FASTA or multi-FASTA format)
Parameters:
Base to search: Min island length: Max island length: Max loop distance: Number of consecutive islands: Min number of perfect islands: Number of bulges per island: Length of bulges per island: Loop symmetry check: Mixed symmetry (Mirror + Palindrome) Mirror Palindrome No core: (retrieve also islands without at least two continuos bases, e.g. G -> GaGcG) Max number of long loops (*): Max number of mismatches: (*) if Max loop distance >= 7, limit the number of loops equal or longer than 7
