Argot2.5 research and development


Argot2.5 has been developed by people at the Department of Biological Chemistry of Padua University (Padova, Italy) and at the FEM-IASMA Research and Innovation Center, Trento (Italy).

People

Dr. Stefano Toppo, Ph.D.
Dr. Marco Falda, Ph.D.
Dr. Enrico Lavezzo, Ph.D.

Viale Colombo, 3 - 35131 Padova
Phone: +39 049 8276958
Fax: +39 049 8073310
E-mail: stefano.toppo@unipd.it


Dr. Paolo Fontana, Ph.D.

Via E. Mach, 1 - 38010 S. Michele all'Adige (TN) - ITALY
Phone: +39 0461 615134
E-mail: paolo.fontana@fmach.it

Licence

References


  • Lavezzo E., Falda M., Fontana P., Bianco L., Toppo S. Enhancing protein function prediction with taxonomic constraints – The Argot2.5 web server.
    Methods, vol. 93, pp. 15-23, 2016.
  • Falda M., Toppo S., Pescarolo A., Lavezzo E., Di Camillo B., Facchinetti A., Cilia E., Velasco R., Fontana P.
    Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms.
    BMC bioinformatics, 13(4). 2012.

  • Radivojac P, Clark WT, Oron TR, Schnoes AM, Wittkop T, Sokolov A, Graim K, Funk C, Verspoor K, Ben-Hur A, Pandey G, Yunes JM, Talwalkar AS, Repo S, Souza ML, Piovesan D, Casadio R, Wang Z, Cheng J, Fang H, Gough J, Koskinen P, Törönen P, Nokso-Koivisto J, Holm L, Cozzetto D, Buchan DW, Bryson K, Jones DT, Limaye B, Inamdar H, Datta A, Manjari SK, Joshi R, Chitale M, Kihara D, Lisewski AM, Erdin S, Venner E, Lichtarge O, Rentzsch R, Yang H, Romero AE, Bhat P, Paccanaro A, Hamp T, Kaßner R, Seemayer S, Vicedo E, Schaefer C, Achten D, Auer F, Boehm A, Braun T, Hecht M, Heron M, Hönigschmid P, Hopf TA, Kaufmann S, Kiening M, Krompass D, Landerer C, Mahlich Y, Roos M, Björne J, Salakoski T, Wong A, Shatkay H, Gatzmann F, Sommer I, Wass MN, Sternberg MJ, Skunca N, Supek F, Bosnjak M, Panov P, Dzeroski S, Smuc T, Kourmpetis YA, van Dijk AD, Braak CJ, Zhou Y, Gong Q, Dong X, Tian W, Falda M, Fontana P, Lavezzo E, Di Camillo B, Toppo S, Lan L, Djuric N, Guo Y, Vucetic S, Bairoch A, Linial M, Babbitt PC, Brenner SE, Orengo C, Rost B, Mooney SD, Friedberg I.
    A large-scale evaluation of computational protein function prediction.
    Nat Methods, 10(3):221-7. 2012.

  • Fontana P, Cestaro A, Velasco R, Formentin E, Toppo S. Rapid annotation of anonymous sequences from genome projects using semantic similarities and a weighting scheme in gene ontology.
    PLoS One, 4(2):e4619. 2009.

Citations


A complete list of citations can be found here.